The Detection and Quantification of Dicamba and Acid Herbicides in Agricultural Samples

May 20 2020

Author: Katherine C. Hyland, PhD on behalf of SCIEX

Free to read

This article has been unlocked and is ready to read.


Highly sensitive detection of a suite of historically challenging acid herbicides in complex environmental (soil) and agricultural matrices address increased demand for method performance and instrument sensitivity. Quantitative determination of dicamba, 2,4-D,  and other related acid herbicides and metabolites to low levels in relevant environmental matrices represents a crucial analytical need in the environmental and agricultural testing spaces. The ability to effectively and reliably perform quantitative analysis in complex extracts of soil and plant tissues by LC-MS/MS without the need for chemical derivatisation is demonstrated.



In the world of farming, weeds are a problem. If left untreated, the overgrowth can reduce yields. Farmers and growers have turned to modern synthetic herbicides such as glyphosate for help. Recent industry news has highlighted that the extensive and consistent use of glyphosate raised health concerns and has even spawned glyphosate-resistant weeds [1].
Because of the glyphosate-resistant weeds, farmers and growers are using alternative acid herbicides (AcHs), such as the well-characterised 2,4-dichlorophenoxyacetic acid (2,4-D), dicamba, triclopyr and others, to help destroy the persistent threat [2]. However, like with glyphosate, health concerns have arisen [3].
The problem with dicamba is that it does not always stay where it is applied. The herbicide can migrate via spray drift from the fields where it is intentionally applied, to nearby fields and farms, damaging crops that have not been engineered with dicamba-tolerant genes. Research by the University of Missouri Extension, USA found that the migration has widely damaged non-resistant crops and other plants [4].
Despite complaints and concerns about drift across plots during spray application, the United States (US) Environmental Protection Agency (EPA) ruled in favor of the continued use of dicamba [5]. The EPA introduced regulations around application patterns to help control migration - things like the time of day you are allowed to apply and the conditions to avoid, such as high winds. Nevertheless, AcHs remain a prevalent concern in environmental monitoring and crop contamination analysis.
One of the most common analytical approaches for AcHs is the EPA Method 8151: Chlorinated Herbicides by GC Using Methylation or Pentafluorobenzylation Derivatization [6]. However, the sample derivatisation process can be time-consuming and costly. This limitation is driving the need for an alternative method to quantify AcHs and metabolites at low levels in relevant environmental matrices, using liquid chromatography tandem mass spectrometry (LC-MS/MS) methods.
In this study, we have identified three primary dicamba metabolites that are generated in the environment.
• 5-OH-dicamba
• 3,6-dichlorosalicylic acid (DCSA) which demonstrates a higher persistence in the environment than the original parent dicamba
• A secondary metabolite of DCSA, DCGA (3,6-dichlorogentisic acid)



GC-MS/MS has historically enabled multiple pesticide residues to be screened, but LC-MS/MS represents an ideal replacement technology for analysing AcHs and their metabolites. It eliminates the need for derivatisation and can achieve greater sensitivity. A recent literature review of chlorophenoxy acid herbicide methods, have also shown LC-MS/MS to be a more rugged analytical approach [7-8].
Acidic functional groups are easy to ionise as their conjugate base. While there are several new AcHs that are more easily ionised by ESI positive modes, this method mainly focuses on the legacy AcHs that require negative mode electrospray ionisation (ESI−) for high sensitivity.
Recent work [9] presented an LC-MS/MS analysis to quantify dicamba, related AcHs and the metabolite compounds mentioned in real-world agricultural samples - water, soil, and soy plant tissue (foliage) samples. These samples were collected from fields either targeted by or close to AcH application in the US Midwest. Samples evaluated included:
•   7 soy foliage samples - Target field planted rows, and increasing distances from field
•  5 soil samples - 3 from target field, and 2 from increasing distances
The goal was to demonstrate the sensitivity and recovery of the compounds in complex matrices. The application note presents quantification method performance data showing ng/g levels in samples for many of these analytes. The dicamba isotopic internal standard, d3-dicamba, was employed to assess and optimise recovery of method performance for both linearity and accuracy.
A Phenomenex Kinetex® F5 column (2.6 μm, 100 x 3 mm) was employed for these highly polar, low molecular weight species. This is a unique stationary phase that is novel for food and environmental analysis. The electronegativity of the fluorines means that it works well for inherently charged negative mode compounds. Strong dipole-dipole and ion-dipole interactions are the suspected interaction mechanisms. Some of these carry an acidic charge, are small and thus poorly retained on a more traditional stationary phase like a C18. The F5 column does a good job of retaining very low molecular weight, negatively charged species. A flow rate of 0.500 mL/min and a 17-minute gradient program (Table 1) provided chromatographic resolution for performance in complex extract matrices.
Table 1: LC gradient time program.
We defined the known retention time values in the acquisition method, in order to optimise the cycle time for best peak shape for quantification performance. Figure 2 shows example elution profiles. Mobile phases are water and methanol with 0.1% formic acid.
For the MS, we used the SCIEX QTRAP® 6500+ LC-MS/MS System for its sensitivity and robustness. The Turbo V™ Ion Source operated in negative mode electrospray ionisation (ESI) was used for optimal ionisation of acidic species. The multiple reaction monitoring (MRM) experiment monitored two transitions for each analyte and we optimised compound-specific voltages designated for maximum sensitivity.



We found that AcH limits of detection (LODs) were largely less than <1 ng/mL, with some exceptions, including 5-OH-dicamba, which had poor sensitivity in comparison to some other AcH compounds. To optimise the method performance for linearity and accuracy, we utilised the isotopically labeled d3-dicamba as the internal standard (ISTD) for all analytes. Data was processed using the SCIEX MultiQuant™ Software.
Table 2 shows LOD and LOQ values for the compound IDs we analysed. You can see 2,4-D, dicamba, dichlorprop and new metabolites DCGA, DCSA, MCPA, MCPB and MCPP. Also note the low limits of quantification (LOQ) for these historically challenging compounds. The highest LOQs are for DCGA and 2-4-DB, which are at 10 ng/mL.
The signal-to-noise ratio at 1 ppb, demonstrates excellent sensitivity. The reproducibility of the isotopic ISTD was 21% CV in matrix samples. This value includes peaks measured in both soy foliage and soil matrices representing excellent method reproducibility in matrix (Figure 3).



Environmental monitoring and crop contamination are becoming more critical, especially as AcH usage becomes more widespread in the agriculture industry. This application demonstrates a sensitive and efficient quantification method for AcHs, including dicamba and its metabolites, in a unique set of field samples analysed on the SCIEX QTRAP 6500+ System with the ExionLC™ AD System and Phenomenex Kinetex F5 analytical column.



1.    Service, RF  (2013) What Happens When Weed Killers Stop Killing?  Science. 341 (6152), 1329.
2.    Pollack, Andrew. (2012) Dow Corn, Resistant to a Weed Killer, Runs Into Opposition. The New York Times.
3.    Ibrahim, MA et al. (1991) Weight of the evidence on the human carcinogenicity of 2,4-D*.  Environ. Health Perspective 96: 213-222.  
4.    A Final Report on Dicamba-injured Soybean Acres. (2017) Integrated Pest Management.
5.    Registration of Dicamba for Use on Dicamba-Tolerant Crops. EPA.
7.    Guo H et al. (2016) Quantitative analysis of dicamba residues in raw agricultural commodities with the use of ion-pairing reagents in LC–ESI–MS/MS. Talanta  149, 103-109.  
8.    Sack C, et al. (2015) Determination of Acid Herbicides Using Modified QuEChERS with Fast Switching ESI(+)/ESI(-) LC-MS/MS. J. Agric. Food Chem. 63(43): 9657-65.
9.    Hyland KC, Winkler P. (2018) Quantitation of Dicamba and Acid Herbicides in Agricultural Field Samples on SCIEX QTRAP® 6500+
System. SCIEX Technical note.
Author information
Katherine C. Hyland, PhD is the Global Technical Marketing Manager for Food and Environmental at SCIEX, a Danaher operating company and a global leader in the precise quantification of molecules.
The SCIEX clinical diagnostic portfolio is For In Vitro Diagnostic Use. Rx Only. Product(s) not available in all countries. For information on availability, please contact your local sales representative or refer to  All other products are For Research Use Only. Not for use in Diagnostic Procedures.
Trademarks and/or registered trademarks mentioned herein are the property of AB Sciex Pte Ltd or their respective owners in the United States and/or certain other countries.   
© 2020 DH Tech. Dev. Pte. Ltd. RUO-MKT-18-11204-A


Free to read

This article has been unlocked and is ready to read.


Digital Edition

Chromatography Today - Buyers' Guide 2022

October 2023

In This Edition Modern & Practical Applications - Accelerating ADC Development with Mass Spectrometry - Implementing High-Resolution Ion Mobility into Peptide Mapping Workflows Chromatogr...

View all digital editions


NGVS 2024

May 23 2024 Beijing, China


May 28 2024 Tel Aviv, Israel


May 28 2024 Leuven, Belgium

PREP 2024

May 28 2024 Philadelphia, PA, USA


May 29 2024 Beijing, China

View all events